Introduction | Quick start | BatchtoolsParam interface | Defining templates | Use cases | Session info

Introduction | Error Handling | Messages and warnings | Catching errors | Identify failures with bpok() | Rerun failed tasks with BPREDO | Logging | Parameters | Setting a threshold | Log files | Worker timeout | Debugging | Accessing the traceback | Adding debug messages | Local debugging with SerialParam | Session info

Introduction | Quick start | The BiocParallel Interface | Classes | BiocParallelParam | register()ing BiocParallelParam instances | Functions | Parallel looping, vectorized and aggregate operations | Parallel evaluation environment | Error handling and logging | Locks and counters | Use cases | Single machine | Forked processes with MulticoreParam | Clusters of independent processes with SnowParam | Ad hoc cluster of multiple machines | Ad hoc Sockets | MPI | Clusters with schedulers | Cluster-centric | R-centric | Analyzing genomic data in Bioconductor | For developers | For server administrators | sessionInfo

Scope | Essentials | Use of bplapply() and RNGseed= | Use with bpiterate() | Use with bptry() | Relationship between RNGseed= and set.seed() | bpstart() and random number streams | Relationship between bplapply() and lapply() | Implementation notes | sessionInfo()